CDS

Accession Number TCMCG017C31063
gbkey CDS
Protein Id OMO60631.1
Location join(13084..13278,13489..13531,13661..13750,13922..13994,14136..14173,14467..14582,14753..14824,14991..15149)
GeneID InterPro:IPR002060
Organism Corchorus olitorius
locus_tag COLO4_33787

Protein

Length 261aa
Molecule type protein
Topology linear
Data_file_division PLN
dblink BioProject:PRJNA215141, BioSample:SAMN03160584
db_source AWUE01021862.1
Definition Squalene/phytoene synthase [Corchorus olitorius]
Locus_tag COLO4_33787

EGGNOG-MAPPER Annotation

COG_category I
Description squalene
KEGG_TC -
KEGG_Module -
KEGG_Reaction R00702        [VIEW IN KEGG]
R02872        [VIEW IN KEGG]
R06223        [VIEW IN KEGG]
KEGG_rclass RC00362        [VIEW IN KEGG]
RC00796        [VIEW IN KEGG]
RC02839        [VIEW IN KEGG]
BRITE ko00000        [VIEW IN KEGG]
ko00001        [VIEW IN KEGG]
ko01000        [VIEW IN KEGG]
ko01006        [VIEW IN KEGG]
KEGG_ko ko:K00801        [VIEW IN KEGG]
EC 2.5.1.21        [VIEW IN KEGG]        [VIEW IN INGREDIENT]
KEGG_Pathway ko00100        [VIEW IN KEGG]
ko00909        [VIEW IN KEGG]
ko01100        [VIEW IN KEGG]
ko01110        [VIEW IN KEGG]
ko01130        [VIEW IN KEGG]
map00100        [VIEW IN KEGG]
map00909        [VIEW IN KEGG]
map01100        [VIEW IN KEGG]
map01110        [VIEW IN KEGG]
map01130        [VIEW IN KEGG]
GOs GO:0003674        [VIEW IN EMBL-EBI]
GO:0003824        [VIEW IN EMBL-EBI]
GO:0004310        [VIEW IN EMBL-EBI]
GO:0004311        [VIEW IN EMBL-EBI]
GO:0004659        [VIEW IN EMBL-EBI]
GO:0005575        [VIEW IN EMBL-EBI]
GO:0005622        [VIEW IN EMBL-EBI]
GO:0005623        [VIEW IN EMBL-EBI]
GO:0005737        [VIEW IN EMBL-EBI]
GO:0005783        [VIEW IN EMBL-EBI]
GO:0005789        [VIEW IN EMBL-EBI]
GO:0005886        [VIEW IN EMBL-EBI]
GO:0006629        [VIEW IN EMBL-EBI]
GO:0006644        [VIEW IN EMBL-EBI]
GO:0006694        [VIEW IN EMBL-EBI]
GO:0006720        [VIEW IN EMBL-EBI]
GO:0006721        [VIEW IN EMBL-EBI]
GO:0006793        [VIEW IN EMBL-EBI]
GO:0006796        [VIEW IN EMBL-EBI]
GO:0008150        [VIEW IN EMBL-EBI]
GO:0008152        [VIEW IN EMBL-EBI]
GO:0008202        [VIEW IN EMBL-EBI]
GO:0008610        [VIEW IN EMBL-EBI]
GO:0009058        [VIEW IN EMBL-EBI]
GO:0009987        [VIEW IN EMBL-EBI]
GO:0012505        [VIEW IN EMBL-EBI]
GO:0016020        [VIEW IN EMBL-EBI]
GO:0016125        [VIEW IN EMBL-EBI]
GO:0016126        [VIEW IN EMBL-EBI]
GO:0016740        [VIEW IN EMBL-EBI]
GO:0016765        [VIEW IN EMBL-EBI]
GO:0019637        [VIEW IN EMBL-EBI]
GO:0031984        [VIEW IN EMBL-EBI]
GO:0042175        [VIEW IN EMBL-EBI]
GO:0043226        [VIEW IN EMBL-EBI]
GO:0043227        [VIEW IN EMBL-EBI]
GO:0043229        [VIEW IN EMBL-EBI]
GO:0043231        [VIEW IN EMBL-EBI]
GO:0044237        [VIEW IN EMBL-EBI]
GO:0044238        [VIEW IN EMBL-EBI]
GO:0044255        [VIEW IN EMBL-EBI]
GO:0044422        [VIEW IN EMBL-EBI]
GO:0044424        [VIEW IN EMBL-EBI]
GO:0044425        [VIEW IN EMBL-EBI]
GO:0044432        [VIEW IN EMBL-EBI]
GO:0044444        [VIEW IN EMBL-EBI]
GO:0044446        [VIEW IN EMBL-EBI]
GO:0044464        [VIEW IN EMBL-EBI]
GO:0045338        [VIEW IN EMBL-EBI]
GO:0051996        [VIEW IN EMBL-EBI]
GO:0071704        [VIEW IN EMBL-EBI]
GO:0071944        [VIEW IN EMBL-EBI]
GO:0098827        [VIEW IN EMBL-EBI]
GO:1901360        [VIEW IN EMBL-EBI]
GO:1901362        [VIEW IN EMBL-EBI]
GO:1901576        [VIEW IN EMBL-EBI]
GO:1901615        [VIEW IN EMBL-EBI]
GO:1901617        [VIEW IN EMBL-EBI]

Sequence

CDS:  
ATGGGGACTTTGGGAGCGCTTGTGAAACACCCAGATGATTTCTATCCTTTGTTGAAGCTGAAAATGGCTGCTAGGCATGCCGAGAAACAGATCCCATCAGAACCTTACTGGGGCTTTTGTTTCTCTATGCTTCACAAAGTTTCTCGTAGTTTCGCTCTCGTTATTCAACAGCTTGATACCAAGCTTGAAAACGCCGTGTGCATATTCTACTTGGTTCTTCGCGCCCTTGATACAGTTGAGGATGACACTAGCATTGCAACAGATGTCAAAGTTCCTATCCTCATTGCTTTTCATCGTCACATATATGATCGTAGCTGGCACTTTTCATGTGGTACAAAAGATTACAAAGTTATGGACCAGTTTCACCATGTATCTACTGCTTTTCTGGAACTTGAAAAAGGTTATCAGGAAGCAATTGAGGACATCACAAAGAGAATGGCAATTGCCTGTACAGTTGGGCATCTGAGCGTTGAGGTTATGAAGCTTGTCAATAACCTCATGAAGGCTCCAGAAGTTGCTGTCACAATGCAAGAGTTCAGCAAGGAAATGACTAAGGAAAACCAAGTCATGGCATTGAAGGAGAAAGGAATTGCTGCTGAATTTCTCTCCTCAACTCAAACATCACAGATTCATGAAGATCTCAACTCGGATTCAGTTACGGATATGTTGTTCCTATATCAGGACCTGTATTCCCAAAACTTTTATGTGAAGCTTCCTGATCTATTTGCTCTGTTTCTTTATTTGTCTATTATAGGCCTAGCTACCGTAAGCTTCATCTTTGAGTAG
Protein:  
MGTLGALVKHPDDFYPLLKLKMAARHAEKQIPSEPYWGFCFSMLHKVSRSFALVIQQLDTKLENAVCIFYLVLRALDTVEDDTSIATDVKVPILIAFHRHIYDRSWHFSCGTKDYKVMDQFHHVSTAFLELEKGYQEAIEDITKRMAIACTVGHLSVEVMKLVNNLMKAPEVAVTMQEFSKEMTKENQVMALKEKGIAAEFLSSTQTSQIHEDLNSDSVTDMLFLYQDLYSQNFYVKLPDLFALFLYLSIIGLATVSFIFE